SMTL ID : 2g09.2 (1 other biounit)

X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, product complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.49, D.51, T.53, D.238 Ligands: PO4.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.49, A:D.51, A:D.238, H2O.14, H2O.16

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: D.49, F.50, D.51, S.164, A.165, G.166, K.213 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:F.50, A:D.51, A:D.51, A:D.51, A:D.51, A:A.165 Water bridges: A:K.213, A:K.213 Salt bridges: A:K.213

1 x PIN: PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)(Non-covalent)

PIN.3: 3 residues within 4Å: Chain A: Q.294, K.295, L.297 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.294 Water bridges: A:K.295, A:K.295, A:T.296, A:L.297 Salt bridges: A:K.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bitto, E. et al., Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning. J.Biol.Chem. (2006)

Release Date

2006-04-04

Peptides

Cytosolic 5'-nucleotidase III: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytosolic 5'-nucleotidase III

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