SMTL ID : 2g1a.1

Crystal structure of the complex between Apha class B acid phosphatase/phosphotransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.44, D.46, D.167 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.44, A:D.46, A:D.167, H2O.1, H2O.2, H2O.3 MG.3: 5 residues within 4Å: Chain B: D.44, D.46, D.167, S.168 Ligands: 5HG.4 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.44, B:D.46, B:D.167, H2O.13, H2O.15, H2O.22 MG.5: 3 residues within 4Å: Chain C: D.44, D.46, D.167 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.44, C:D.46, C:D.167, H2O.26, H2O.26, H2O.27 MG.7: 5 residues within 4Å: Chain D: D.44, D.46, D.167, S.168 Ligands: 5HG.8 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.44, D:D.46, D:D.167, H2O.38, H2O.39, H2O.47

4 x 5HG: {[2-(6-AMINO-9H-PURIN-9-YL)ETHOXY]METHYL}PHOSPHONIC ACID(Non-covalent)

5HG.2: 11 residues within 4Å: Chain A: D.44, D.46, F.56, Y.70, L.71, T.112, G.113, K.152, N.170, T.192, Y.193 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.113, A:K.152, A:K.152, A:S.168, A:N.170, A:T.192 Water bridges: A:I.45, A:D.46, A:D.46, A:N.170, A:T.192, A:K.194 pi-Stacking: A:F.56, A:Y.193, A:Y.193 5HG.4: 14 residues within 4Å: Chain B: D.44, D.46, D.47, S.52, S.53, F.56, T.112, G.113, K.152, S.168, N.170, T.192, Y.193 Ligands: MG.3 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:D.46, B:Y.70, B:G.113, B:K.152, B:K.152, B:S.168, B:N.170, B:T.192, B:T.192 Water bridges: B:I.45, B:D.46, B:D.46, B:S.52, B:D.145, B:N.170, B:N.170, B:T.192 pi-Stacking: B:F.56, B:F.56, B:Y.193 5HG.6: 11 residues within 4Å: Chain C: D.44, D.46, F.56, Y.70, L.71, T.112, G.113, K.152, N.170, T.192, Y.193 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:D.46, C:Y.70, C:T.112, C:G.113, C:K.152, C:K.152, C:S.168, C:N.170, C:T.192 Water bridges: C:I.45, C:D.46, C:D.46, C:E.68, C:N.170, C:K.194 pi-Stacking: C:F.56, C:Y.193, C:Y.193 5HG.8: 14 residues within 4Å: Chain D: D.44, D.46, D.47, S.52, S.53, F.56, T.112, G.113, K.152, S.168, N.170, T.192, Y.193 Ligands: MG.7 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:G.113, D:K.152, D:K.152, D:S.168, D:N.170, D:T.192, D:T.192, D:T.192 Water bridges: D:I.45, D:D.46, D:D.46, D:D.47, D:S.52, D:N.170, D:N.170 pi-Stacking: D:F.56, D:F.56, D:Y.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leone, R. et al., Crystal structure of the complex between Apha class B acid phosphatase/phosphotransferase. To be published

Release Date

2007-04-24

Peptides

Class B acid phosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Class B acid phosphatase

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