SMTL ID : 2g3i.1

Structure of S.olivaceoviridis xylanase Q88A/R275A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.56, W.92, Q.103, A.104, D.107 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.103, A:D.107 Water bridges: A:E.53, A:R.56, A:R.56, A:G.57, A:G.57, A:H.108 Salt bridges: A:R.56 PO4.2: 7 residues within 4Å: Chain A: K.48, H.81, W.85, N.127, E.128, Q.205, E.236 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.127, A:E.128, A:E.128, A:Q.205 Water bridges: A:K.48, A:K.48 Salt bridges: A:K.48, A:H.81 PO4.3: 2 residues within 4Å: Chain A: K.290, A.291 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.291 Water bridges: A:N.284, A:N.284, A:A.292, A:A.292, A:A.292 PO4.4: 2 residues within 4Å: Chain A: R.36, K.289 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.36, A:R.36, A:K.289 Salt bridges: A:R.36, A:K.289 PO4.5: 3 residues within 4Å: Chain A: D.132, R.139, Y.172 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.132, A:D.132, A:Y.172 Water bridges: A:R.139, A:R.139 Salt bridges: A:R.139 PO4.6: 5 residues within 4Å: Chain A: R.138, N.148, M.188, D.191, F.192 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.148, A:N.187, A:D.191, A:R.195 Water bridges: A:R.138 Salt bridges: A:R.138 PO4.7: 4 residues within 4Å: Chain A: S.131, D.133, R.139, D.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.131, A:S.131, A:D.133, A:R.139, A:D.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ichinose, H. et al., Structure-based engineering of glucose specificity in a family 10 xylanase from Streptomyces olivaceoviridis E-86. PROCESS BIOCHEM (2012)

Release Date

2007-03-06

Peptides

Xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Xylanase

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