SMTL ID : 2ga8.1

Crystal structure of YFH7 from Saccharomyces cerevisiae: a putative P-loop containing kinase with a circular permutation.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

4 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 3 residues within 4Å: Chain A: K.204, L.207, C.208 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:K.204 HG.2: 3 residues within 4Å: Chain A: D.236, F.238, C.255 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.255 HG.3: 5 residues within 4Å: Chain A: V.101, L.166, C.170, L.171, F.174 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.170, A:C.170 HG.9: 3 residues within 4Å: Chain A: P.33, L.332 Ligands: BME.10 No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: N.66, D.67, R.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.67, A:R.68 Water bridges: A:L.69, A:L.69 Salt bridges: A:R.68 SO4.5: 2 residues within 4Å: Chain A: R.305, R.309 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.312 Salt bridges: A:R.309 SO4.6: 8 residues within 4Å: Chain A: S.32, P.33, G.34, S.35, G.36, K.37, S.38, R.309 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.34, A:S.35, A:G.36, A:K.37, A:S.38 Water bridges: A:K.37, A:S.38, A:T.39 Salt bridges: A:K.37, A:R.309 SO4.7: 2 residues within 4Å: Chain A: R.323, R.327 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.327 SO4.8: 4 residues within 4Å: Chain A: Q.107, L.196, K.200, K.279 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.107 Salt bridges: A:K.200, A:K.279

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.10: 6 residues within 4Å: Chain A: P.33, V.306, R.309, H.310, L.332 Ligands: HG.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gueguen-Chaignon, V. et al., Crystal structure and functional analysis identify the P-loop containing protein YFH7 of Saccharomyces cerevisiae as an ATP-dependent kinase. Proteins (2007)

Release Date

2007-03-20

Peptides

Hypothetical 39.9 kDa protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypothetical 39.9 kDa protein

Related Entries With Identical Sequence