SMTL ID : 2ga9.1

Crystal Structure of the Heterodimeric Vaccinia Virus Polyadenylate Polymerase with Bound ATP-gamma-S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain B: D.192, D.194 Ligands: AGS.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.192, B:D.194, B:D.194, H2O.6 CA.2: 2 residues within 4Å: Chain B: D.192, D.194 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.192, B:D.194, H2O.10

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 17 residues within 4Å: Chain B: Y.176, G.177, S.178, R.189, G.191, D.192, D.194, Q.271, N.274, M.275, K.277, M.278, R.284, K.294, N.392, R.450 Ligands: CA.1 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:S.178, B:S.178, B:S.178, B:Q.271, B:K.294, B:K.294, B:N.392, B:N.392, B:R.450 Water bridges: B:Y.176, B:Y.179, B:N.274, B:R.284, B:R.284, B:N.376, B:S.391 Salt bridges: B:R.284, B:R.298 AGS.4: 8 residues within 4Å: Chain B: F.37, N.38, I.41, F.42, L.45, T.99, G.103, T.106 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.38, B:N.38, B:F.42, B:T.99, B:G.103 pi-Stacking: B:F.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moure, C.M. et al., Crystal structures of the vaccinia virus polyadenylate polymerase heterodimer: insights into ATP selectivity and processivity. Mol.Cell (2006)

Release Date

2006-05-16

Peptides

Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase: A
Poly(A) polymerase catalytic subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase

Poly(A) polymerase catalytic subunit

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