SMTL ID : 2gah.1

Heterotetrameric sarcosine: structure of a diflavin metaloenzyme at 1.85 a resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: V.134, G.135, A.136, G.137, P.138, A.139, L.157, D.158, E.159, R.160, G.165, T.166, T.203, T.204, V.205, A.248, T.249, G.250, S.295, F.381, L.387, G.417, A.418, L.423, D.424, T.425, Y.554 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:F.381, A:F.381, A:L.423 Hydrogen bonds: A:A.136, A:G.137, A:A.139, A:G.140, A:E.159, A:R.160, A:R.160, A:T.166, A:V.205, A:V.205, A:A.418, A:D.424 Water bridges: A:A.136, A:G.165, A:T.166, A:T.166, A:G.250, A:G.250, A:A.251, A:A.251, A:N.293, A:E.298, A:E.298, A:E.298, A:T.425

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 38 residues within 4Å: Chain B: V.27, G.28, G.29, G.30, G.31, H.32, L.52, E.53, K.54, G.60, N.61, M.62, R.64, N.65, T.66, T.67, I.68, C.195, E.196, V.197, A.225, G.226, A.227, H.229, L.233, L.248, Q.249, A.250, G.327, V.329, W.353, G.354, T.355, G.356, G.357, F.358, K.359 Ligands: FOA.4 33 PLIP interactions: 33 interactions with chain B Hydrophobic interactions: B:L.248, B:L.248, B:L.248, B:A.250 Hydrogen bonds: B:G.31, B:H.32, B:G.33, B:K.54, B:G.60, B:N.61, B:N.61, B:N.65, B:T.66, B:T.66, B:I.68, B:I.68, B:V.197, B:V.197, B:G.354, B:G.357, B:F.358, B:K.359 Water bridges: B:G.29, B:G.30, B:E.53, B:K.54, B:K.54, B:G.59, B:E.196, B:G.228, B:H.229 Salt bridges: B:H.32 pi-Cation interactions: B:K.54

1 x FMN: FLAVIN MONONUCLEOTIDE(Covalent)

FMN.3: 17 residues within 4Å: Chain A: K.510, R.511, T.517, Q.521, T.549, R.551 Chain B: A.63, R.64, N.65, T.67, K.172, H.173, V.252, K.278, E.280, R.323, W.325 23 PLIP interactions: 14 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:T.67, B:K.172, B:W.325 Hydrogen bonds: B:K.278, B:E.280, B:R.323, B:R.323, A:K.510, A:R.511, A:T.517, A:Q.521 Water bridges: B:A.63, B:R.64, B:R.64, B:R.64, B:R.64, A:R.511, A:T.517, A:T.549, A:T.549 Salt bridges: B:R.64, B:R.323, A:R.551

1 x FOA: 2-FUROIC ACID(Non-covalent)

FOA.4: 12 residues within 4Å: Chain B: T.66, I.68, R.70, Y.73, M.265, Y.272, T.355, G.356, K.359, A.401, V.403 Ligands: FAD.2 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.68 Hydrogen bonds: B:Y.73 Salt bridges: B:R.70, B:K.359 pi-Stacking: B:Y.272

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain D: C.6, C.9, H.59, C.63 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.6, D:C.9, D:H.59, D:C.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z.W. et al., Heterotetrameric sarcosine oxidase: structure of a diflavin metalloenzyme at 1.85 a resolution. J.Mol.Biol. (2006)

Release Date

2006-08-08

Peptides

heterotetrameric sarcosine oxidase alpha-subunit: A
heterotetrameric sarcosine oxidase beta-subunit: B
heterotetrameric sarcosine oxidase gamma-subunit: C
heterotetrameric sarcosine oxidase delta-subunit: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

heterotetrameric sarcosine oxidase alpha-subunit

heterotetrameric sarcosine oxidase beta-subunit

heterotetrameric sarcosine oxidase gamma-subunit

heterotetrameric sarcosine oxidase delta-subunit

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