SMTL ID : 2gam.2 (1 other biounit)

X-ray crystal structure of murine leukocyte-type Core 2 b1,6-N-acetylglucosaminyltransferase (C2GnT-L) in complex with Galb1,3GalNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NGA- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)

NGA-GAL.1: 13 residues within 4Å: Chain A: Y.150, E.206, N.213, K.214, R.217, G.248, S.249, E.283, D.309, W.319, Y.321, F.322 Chain B: K.304 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.214, A:S.249, A:Y.321, B:K.304, A:Y.150, A:Y.150, A:N.213, A:K.214, A:K.214, A:R.217, A:R.217, A:Y.321, A:Y.321 Water bridges: A:E.206, A:E.208, A:E.208, A:E.283, B:K.304 Salt bridges: A:K.214, A:R.217 NGA-GAL.2: 12 residues within 4Å: Chain A: K.304 Chain B: E.206, N.213, K.214, R.217, G.248, S.249, E.283, D.309, W.319, Y.321, F.322 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.214, B:S.249, B:Y.321, A:K.304, B:K.214, B:K.214, B:R.217, B:R.217, B:Y.321, B:Y.321 Water bridges: B:E.208, B:E.208, B:S.249, B:Y.321, B:Y.150 Hydrophobic interactions: B:Y.321 Salt bridges: B:R.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pak, J.E. et al., X-ray Crystal Structure of Leukocyte Type Core 2 beta1,6-N-Acetylglucosaminyltransferase: Evidence for a covergence of metal ion independent glycosyltransferase mechanism. J.Biol.Chem. (2006)

Release Date

2006-07-11

Peptides

beta-1,6-N-acetylglucosaminyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

beta-1,6-N-acetylglucosaminyltransferase

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