SMTL ID : 2gbb.1 (1 other biounit)

Crystal structure of secreted chorismate mutase from Yersinia pestis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.139, S.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.140, A:S.140 SO4.2: 3 residues within 4Å: Chain A: K.18, Y.76, H.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.76, A:Y.76 Salt bridges: A:K.18, A:H.136 SO4.3: 2 residues within 4Å: Chain A: E.85, P.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.85 SO4.4: 3 residues within 4Å: Chain A: A.127, H.128, N.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.131 Salt bridges: A:H.128 SO4.5: 9 residues within 4Å: Chain A: P.30, I.31, Y.74 Chain B: L.29, P.30, I.31, E.32, Y.74, R.77 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:I.31, A:Y.74, A:Y.74, B:I.31, B:E.32 Water bridges: A:E.32, A:E.32, A:R.77, A:R.77, B:R.77 SO4.7: 2 residues within 4Å: Chain B: T.139, S.140 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.140 Water bridges: B:T.139, B:A.141 SO4.8: 4 residues within 4Å: Chain B: E.85, P.86, G.87, W.88 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.87, B:W.88 SO4.9: 3 residues within 4Å: Chain B: Q.135, H.136, N.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.137 Salt bridges: B:H.136

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.6: 13 residues within 4Å: Chain A: R.13, M.17, V.20, K.24, I.31, Q.36, E.37, V.40, Q.65, I.66, A.69, Q.73, R.97 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.66, A:A.69 Hydrogen bonds: A:Q.36, A:Q.65, A:Q.73, A:Q.73 Water bridges: A:R.97 Salt bridges: A:R.13, A:K.24, A:K.24, A:R.97 CIT.10: 14 residues within 4Å: Chain B: R.13, M.17, V.20, K.24, I.31, D.33, Q.36, E.37, V.40, I.66, A.69, K.70, Q.73, R.97 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:A.69 Hydrogen bonds: B:D.33, B:Q.36, B:E.37, B:Q.73, B:Q.73 Salt bridges: B:R.13, B:K.24, B:K.24, B:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.K. et al., A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis. Febs J. (2008)

Release Date

2007-04-03

Peptides

putative chorismate mutase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

putative chorismate mutase

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