SMTL ID : 2gcg.1 (1 other biounit)

Ternary Crystal Structure of Human Glyoxylate Reductase/Hydroxypyruvate Reductase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 26 residues within 4Å: Chain A: V.85, T.113, I.161, G.162, L.163, G.164, R.165, I.166, T.185, G.186, R.187, Q.188, R.190, A.217, C.218, S.219, A.223, T.224, I.245, S.246, R.247, D.271, H.295, G.297, S.298 Ligands: DGY.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:V.85, A:T.113, A:I.166 Hydrogen bonds: A:G.162, A:R.165, A:I.166, A:R.187, A:Q.188, A:S.219, A:S.219, A:S.219, A:D.271, A:D.271, A:G.297, A:S.298 Water bridges: A:G.164, A:G.186, A:R.190, A:L.220, A:L.220 Salt bridges: A:R.187, A:R.190 NDP.4: 25 residues within 4Å: Chain B: V.85, G.86, T.113, I.161, G.162, L.163, G.164, R.165, I.166, T.185, G.186, R.187, Q.188, R.190, A.217, C.218, S.219, T.224, I.245, S.246, R.247, D.271, H.295, G.297, S.298 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:V.85, B:T.113, B:I.166 Hydrogen bonds: B:L.163, B:R.165, B:I.166, B:R.187, B:Q.188, B:R.190, B:S.219, B:I.245, B:G.297, B:S.298 Water bridges: B:D.88, B:R.165, B:G.167, B:G.186, B:R.187, B:S.219, B:L.220, B:S.298 Salt bridges: B:R.165, B:R.165, B:R.187, B:R.190

1 x DGY: (2R)-2,3-DIHYDROXYPROPANOIC ACID(Non-covalent)

DGY.2: 10 residues within 4Å: Chain A: L.61, S.84, V.85, G.86, L.109, R.247, H.295, S.298 Chain B: W.143 Ligands: NDP.1 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:W.143, A:V.85, A:G.86, A:R.247, A:R.247, A:S.298 Water bridges: A:R.304 Salt bridges: A:R.247

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: R.302 Chain B: G.152, T.154, Q.155, S.156, D.212, F.213 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.152, B:D.212 Salt bridges: A:R.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Booth, M.P.S. et al., Structural basis of substrate specificity in human glyoxylate reductase/hydroxypyruvate reductase. J.Mol.Biol. (2006)

Release Date

2006-07-18

Peptides

Glyoxylate reductase/hydroxypyruvate reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glyoxylate reductase/hydroxypyruvate reductase

Related Entries With Identical Sequence