SMTL ID : 2gcn.1

Crystal structure of the human RhoC-GDP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.39, T.57 Ligands: GDP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.39, A:T.57, H2O.6, H2O.6, H2O.6

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: D.33, G.34, A.35, C.36, G.37, K.38, T.39, C.40, F.50, V.55, K.138, D.140, L.141, S.180, A.181, K.182 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.33, A:A.35, A:C.36, A:G.37, A:K.38, A:T.39, A:T.39, A:C.40, A:K.138, A:K.138, A:A.181, A:K.182 Water bridges: A:K.38, A:T.39, A:E.52, A:T.80 Salt bridges: A:K.38, A:D.140 pi-Stacking: A:F.50

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: T.183, E.185 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: K.139, R.142 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.142, A:R.142 Water bridges: A:K.139, A:S.161 EDO.5: 2 residues within 4Å: Chain A: Q.143 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain A: G.34, G.82, D.87, R.90, K.118, W.119 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.34, A:R.90, A:R.90, A:K.118 Water bridges: A:G.32 EDO.7: 2 residues within 4Å: Chain A: I.63, D.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.65 Water bridges: A:D.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dias, S.M.G. et al., X-ray Crystal Structures Reveal Two Activated States for RhoC. Biochemistry (2007)

Release Date

2007-03-27

Peptides

Rho-related GTP-binding protein RhoC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rho-related GTP-binding protein RhoC

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