SMTL ID : 2gcp.1

Crystal structure of the human RhoC-GSP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.39, T.57 Ligands: GSP.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.39, A:T.57, H2O.1, H2O.2 MG.2: 1 residues within 4Å: Chain A: H.125 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.125, H2O.4 MG.3: 2 residues within 4Å: Chain A: R.165, Y.176 No protein-ligand interaction detected (PLIP)

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.4: 22 residues within 4Å: Chain A: D.33, G.34, A.35, C.36, G.37, K.38, T.39, C.40, F.50, Y.54, P.56, T.57, A.81, G.82, K.138, D.140, L.141, S.180, A.181, K.182 Ligands: MG.1, EDO.6 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:A.35, A:C.36, A:G.37, A:K.38, A:K.38, A:T.39, A:C.40, A:Y.54, A:T.57, A:G.82, A:K.138, A:K.138, A:A.181, A:K.182 Water bridges: A:T.39, A:L.41, A:E.52, A:T.57, A:T.57, A:Q.83 Salt bridges: A:K.38, A:D.140 pi-Stacking: A:F.50

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: D.33, G.34, A.35, C.36, S.108, D.110, S.111 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.33, A:A.35, A:S.108, A:D.110 Water bridges: A:S.105 EDO.6: 7 residues within 4Å: Chain A: T.39, C.40, P.51, V.53, Y.54, V.55 Ligands: GSP.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.55, A:V.55 Water bridges: A:P.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dias, S.M.G. et al., X-ray Crystal Structures Reveal Two Activated States for RhoC. Biochemistry (2007)

Release Date

2007-03-27

Peptides

Rho-related GTP-binding protein RhoC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rho-related GTP-binding protein RhoC

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