SMTL ID : 2gcu.1 (1 other biounit)

X-Ray Structure of Gene Product from Arabidopsis Thaliana At1g53580

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: H.61, H.117, D.142 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.61, A:H.117, A:D.142, H2O.2, H2O.8, H2O.9 FE2.9: 3 residues within 4Å: Chain B: H.61, H.117, D.142 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.61, B:H.117, B:D.142, H2O.18, H2O.18, H2O.18

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.151, Y.185, P.222 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.65, A:K.223, A:K.223 Salt bridges: A:R.151

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: R.147, F.188, V.190, E.195 Chain B: R.6, L.46 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.189, A:V.190, A:E.195, B:R.6 EDO.4: 5 residues within 4Å: Chain A: F.5, R.6, Q.7 Chain B: E.189, V.190 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.7, A:Q.7 Water bridges: B:V.190 EDO.5: 4 residues within 4Å: Chain A: K.86, G.89, S.90, F.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.86, A:K.86, A:G.89 EDO.6: 5 residues within 4Å: Chain A: F.9, F.16, E.189 Chain B: F.9, E.189 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.189, A:E.189 Water bridges: B:G.187, B:F.188, A:G.187, A:F.188 EDO.7: 7 residues within 4Å: Chain A: L.145, I.146, R.147, G.148, D.184, Y.185, K.186 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.147, A:D.184, A:Y.185, A:K.186 Water bridges: A:K.186 EDO.8: 2 residues within 4Å: Chain A: D.239, V.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.239 EDO.10: 7 residues within 4Å: Chain A: R.6, L.46 Chain B: I.146, R.147, F.188, V.190, E.195 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.6, B:V.190, B:E.195 Water bridges: B:E.189 EDO.11: 5 residues within 4Å: Chain A: E.189, V.190 Chain B: F.5, R.6, Q.7 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.7, B:Q.7 Water bridges: A:V.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoy, J.G. et al., Structure of an ETHE1-like protein from Arabidopsis thaliana. ACTA CRYSTALLOGR.,SECT.D (2006)

Release Date

2006-04-18

Peptides

Putative hydroxyacylglutathione hydrolase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative hydroxyacylglutathione hydrolase 3

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