SMTL ID : 2gd9.1

Crystal structure of a putative dihydrofolate reductase (bsu40760, yyap) from bacillus subtilis at 2.30 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.54, K.56, S.57, R.91, G.127 Ligand excluded by PLIP

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: E.24, K.56, R.91, A.128, S.129, K.156 Ligands: EDO.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.24, A:A.128, A:S.129, A:S.129, A:S.129 Salt bridges: A:K.56, A:R.91, A:K.156 PO4.6: 4 residues within 4Å: Chain B: K.56, A.128, S.129, K.156 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.129, B:S.129 Water bridges: B:A.128, B:A.128, B:L.130 Salt bridges: B:K.56, B:K.156

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: L.15, I.23, E.24, Y.125, A.128, I.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.24 Water bridges: A:A.16 EDO.4: 4 residues within 4Å: Chain A: R.91, N.98, K.156 Ligands: PO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.56, A:R.91, A:K.156 Water bridges: A:S.129, A:S.129, A:S.129 EDO.5: 6 residues within 4Å: Chain A: T.18, L.19, I.147 Chain B: T.18, L.19, I.147 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.18, B:T.18 EDO.7: 6 residues within 4Å: Chain B: L.15, E.24, Y.125, G.127, A.128, I.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.24 Water bridges: B:A.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of (2636623) from BACILLUS SUBTILIS at 2.30 A resolution. To be published

Release Date

2006-03-28

Peptides

Hypothetical protein yyaP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein yyaP