SMTL ID : 2gg5.1

Novel bacterial methionine aminopeptidase inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 7 residues within 4Å: Chain A: D.107, H.170, T.201, E.203, E.234 Ligands: CO.2, U19.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.107, A:H.170, A:E.203, A:E.203, A:E.234 CO.2: 6 residues within 4Å: Chain A: D.96, T.98, D.107, E.234 Ligands: CO.1, U19.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.96, A:D.96, A:D.107, A:E.234

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: I.72, N.73, V.75, S.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.73, A:S.230

1 x U19: 5-IMINO-4-(2-TRIFLUOROMETHYL-PHENYLAZO)-5H-PYRAZOL-3-YLAMINE(Non-covalent)

U19.4: 16 residues within 4Å: Chain A: C.58, Y.61, H.62, Y.64, C.69, D.96, T.98, D.107, H.170, F.176, H.177, E.203, W.220, E.234 Ligands: CO.1, CO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.220 Hydrogen bonds: A:D.96 Water bridges: A:C.168, A:C.168, A:Q.232 pi-Stacking: A:Y.61, A:H.78 Halogen bonds: A:C.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Evdokimov, A.G. et al., Serendipitous discovery of novel bacterial methionine aminopeptidase inhibitors. Proteins (2007)

Release Date

2006-06-13

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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