SMTL ID : 2gge.1

Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.159, D.190, E.217, E.243, H.293 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.217, A:E.243, A:H.293, H2O.9, H2O.9, H2O.9 MG.2: 4 residues within 4Å: Chain B: D.190, E.217, E.243, H.293 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.217, B:E.243, B:H.293, H2O.9, H2O.18, H2O.19 MG.3: 4 residues within 4Å: Chain C: D.190, E.217, E.243, H.293 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.217, C:E.243, C:H.293, H2O.26, H2O.26 MG.4: 5 residues within 4Å: Chain D: K.159, D.190, E.217, E.243, H.293 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.217, D:E.243, D:H.293, H2O.28, H2O.30, H2O.35 MG.7: 5 residues within 4Å: Chain E: K.159, D.190, E.217, E.243, H.293 6 PLIP interactions: 3 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:E.217, E:E.243, E:H.293, H2O.38, H2O.39, H2O.41 MG.8: 4 residues within 4Å: Chain F: D.190, E.217, E.243, H.293 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:E.217, F:H.293, H2O.44, H2O.45, H2O.49 MG.9: 5 residues within 4Å: Chain G: K.159, D.190, E.217, E.243, H.293 6 PLIP interactions: 3 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:E.217, G:E.243, G:H.293, H2O.49, H2O.57, H2O.57 MG.11: 4 residues within 4Å: Chain H: D.190, E.217, E.243, H.293 6 PLIP interactions: 3 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:E.217, H:E.243, H:H.293, H2O.57, H2O.65, H2O.66

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain D: S.372, A.373, E.375, G.376 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: R.65 Chain D: W.54, A.373, Y.374 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain G: Q.193, F.222, N.244 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A. To be Published

Release Date

2006-04-18

Peptides

yitF: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

yitF

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