SMTL ID : 2ght.2 (1 other biounit)

CTD-specific phosphatase Scp1 in complex with peptide from C-terminal domain of RNA polymerase II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SER- TYR- SER- PRO- THR- SEP- PRO- SER: DNA-directed RNA polymerase II largest subunit(Non-covalent)

SER-TYR-SER-PRO-THR-SEP-PRO-SER.1: 21 residues within 4Å: Chain A: N.21, L.22, D.23, F.31, V.43, E.44, I.45, D.46, T.77, A.78, S.79, L.80, K.82, Y.83, R.103, N.112, Y.113, K.115, S.133, S.136 Ligands: MG.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:F.31, A:V.43, A:I.45, A:I.45, A:L.80, A:K.82, A:Y.83, A:Y.113 Hydrogen bonds: A:N.21, A:L.22, A:D.23, A:D.23, A:D.23, A:D.46, A:T.77, A:A.78, A:L.80, A:R.103, A:R.103, A:Y.113, A:S.133, A:S.133 Water bridges: A:D.23, A:K.115, A:N.132, A:S.136 Salt bridges: A:K.115, A:K.115

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: N.21, D.23, D.131, N.132 Ligands: SER-TYR-SER-PRO-THR-SEP-PRO-SER.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.23, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Determinants for dephosphorylation of the RNA polymerase II C-terminal domain by Scp1. Mol.Cell (2006)

Release Date

2006-12-05

Peptides

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1

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