SMTL ID : 2gi7.1

Crystal structure of human platelet Glycoprotein VI (GPVI)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.44, G.65, R.66, Y.170 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.44, A:R.66 Salt bridges: A:K.42, A:R.66 SO4.2: 6 residues within 4Å: Chain A: L.40, K.42, R.47, Y.48, Q.49, L.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.42, A:R.47

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain A: W.172 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.141 GOL.5: 3 residues within 4Å: Chain B: K.60, R.61, S.62 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.61, B:R.61, B:S.62, B:S.62, B:S.62 Water bridges: B:S.62

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain B: S.44, R.66 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horii, K. et al., Structural basis for platelet collagen responses by the immune-type receptor glycoprotein VI. Blood (2006)

Release Date

2007-04-03

Peptides

GPVI protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GPVI protein