SMTL ID : 2gic.1

Crystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

homo-10-mer

Ligands

30 x IUM: URANYL (VI) ION(Non-covalent)(Non-functional Binders)

IUM.1: 1 residues within 4Å: Chain B: D.123 Ligand excluded by PLIP IUM.2: 3 residues within 4Å: Chain B: E.253, E.323 Chain C: D.343 Ligand excluded by PLIP IUM.3: 2 residues within 4Å: Chain B: D.358 Chain F: D.384 Ligand excluded by PLIP IUM.4: 2 residues within 4Å: Chain B: D.384 Chain C: D.358 Ligand excluded by PLIP IUM.5: 1 residues within 4Å: Chain C: D.123 Ligand excluded by PLIP IUM.6: 3 residues within 4Å: Chain C: E.253, E.323 Chain D: D.343 Ligand excluded by PLIP IUM.7: 1 residues within 4Å: Chain C: D.384 Ligand excluded by PLIP IUM.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.9: 3 residues within 4Å: Chain D: E.253, E.323 Chain E: D.343 Ligand excluded by PLIP IUM.10: 1 residues within 4Å: Chain D: D.384 Ligand excluded by PLIP IUM.11: 2 residues within 4Å: Chain E: Q.57, D.123 Ligand excluded by PLIP IUM.12: 3 residues within 4Å: Chain E: E.253, E.323 Chain L: D.343 Ligand excluded by PLIP IUM.13: 1 residues within 4Å: Chain F: D.123 Ligand excluded by PLIP IUM.14: 4 residues within 4Å: Chain B: D.343 Chain F: R.252, E.253, E.323 Ligand excluded by PLIP IUM.15: 2 residues within 4Å: Chain F: D.358 Chain K: D.384 Ligand excluded by PLIP IUM.16: 1 residues within 4Å: Chain H: D.123 Ligand excluded by PLIP IUM.17: 3 residues within 4Å: Chain H: E.253, E.323 Chain I: D.343 Ligand excluded by PLIP IUM.18: 2 residues within 4Å: Chain H: D.358 Chain L: D.384 Ligand excluded by PLIP IUM.19: 2 residues within 4Å: Chain H: D.384 Chain I: D.358 Ligand excluded by PLIP IUM.20: 1 residues within 4Å: Chain I: D.123 Ligand excluded by PLIP IUM.21: 3 residues within 4Å: Chain I: E.253, E.323 Chain J: D.343 Ligand excluded by PLIP IUM.22: 1 residues within 4Å: Chain I: D.384 Ligand excluded by PLIP IUM.23: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.24: 3 residues within 4Å: Chain J: E.253, E.323 Chain K: D.343 Ligand excluded by PLIP IUM.25: 1 residues within 4Å: Chain J: D.384 Ligand excluded by PLIP IUM.26: 2 residues within 4Å: Chain K: Q.57, D.123 Ligand excluded by PLIP IUM.27: 3 residues within 4Å: Chain F: D.343 Chain K: E.253, E.323 Ligand excluded by PLIP IUM.28: 1 residues within 4Å: Chain L: D.123 Ligand excluded by PLIP IUM.29: 4 residues within 4Å: Chain H: D.343 Chain L: R.252, E.253, E.323 Ligand excluded by PLIP IUM.30: 2 residues within 4Å: Chain E: D.384 Chain L: D.358 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, T.J. et al., Structure of the vesicular stomatitis virus nucleoprotein-RNA complex unveils how the RNA is sequestered. Science (2006)

Release Date

2006-08-22

Peptides

Nucleocapsid protein: BCDEFHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
B

D
C

E
D

F
E

H
A

I
B

J
C

K
D

L
E

Nucleocapsid protein

Related Entries With Identical Sequence