SMTL ID : 2gil.2 (3 other biounits)

Structure of the extremely slow GTPase Rab6A in the GTP bound form at 1.8 resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.15, T.33 Ligands: GTP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.15, A:T.33, H2O.6, H2O.6

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 23 residues within 4Å: Chain A: Q.10, S.11, V.12, G.13, K.14, T.15, S.16, F.26, D.27, N.28, Y.30, A.32, T.33, A.58, G.59, N.114, K.115, D.117, L.118, S.144, A.145, K.146 Ligands: MG.1 33 PLIP interactions: 33 interactions with chain A Hydrogen bonds: A:S.11, A:V.12, A:G.13, A:K.14, A:T.15, A:T.15, A:S.16, A:S.16, A:D.27, A:T.33, A:T.33, A:G.59, A:N.114, A:K.115, A:K.115, A:A.145, A:K.146 Water bridges: A:S.11, A:T.15, A:T.15, A:N.28, A:N.28, A:Q.31, A:T.33, A:Q.60, A:Q.60, A:K.146, A:K.146 Salt bridges: A:K.14, A:K.14, A:D.117 pi-Stacking: A:F.26, A:F.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bergbrede, T. et al., Structure of the extremely slow GTPase Rab6A in the GTP bound form at 1.8 resolution. J.STRUCT.BIOL. (2005)

Release Date

2006-06-27

Peptides

Ras-related protein Rab-6A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ras-related protein Rab-6A

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