SMTL ID : 2gj5.1

Crystal structure of a secondary vitamin D3 binding site of milk beta-lactoglobulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x VD3: (1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLI DENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL(Non-covalent)

VD3.1: 14 residues within 4Å: Chain A: S.36, P.38, L.39, V.41, V.43, I.56, L.58, K.60, E.62, I.71, I.84, A.86, F.105, M.107 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.39, A:V.41, A:V.43, A:L.58, A:K.60, A:E.62, A:I.71, A:I.84, A:A.86, A:F.105 Hydrogen bonds: A:K.60, A:K.60 VD3.2: 8 residues within 4Å: Chain A: D.137, L.140, K.141, L.143, M.145, H.146, I.147, R.148 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.140, A:K.141, A:M.145, A:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, M.C. et al., Crystal structure of a secondary vitamin D3 binding site of milk beta-lactoglobulin. Proteins (2008)

Release Date

2007-10-02

Peptides

Beta-lactoglobulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactoglobulin

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