- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: S.18, T.39, D.58
- Ligands: ALF.1, GDP.5
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.18, A:T.39, H2O.1, H2O.1
MG.7: 5 residues within 4Å:- Chain B: S.18, T.39, D.58
- Ligands: ALF.6, GDP.10
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.18, B:T.39, H2O.8, H2O.8
- 2 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: N.14, T.33, I.35, T.38
- Ligands: ALF.1, GDP.5
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:T.33, A:I.35
K.8: 6 residues within 4Å:- Chain B: N.14, T.33, I.35, T.38
- Ligands: ALF.6, GDP.10
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:T.33, B:I.35
- 2 x SE: SELENIUM ATOM(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.5: 20 residues within 4Å:- Chain A: N.14, A.15, G.16, K.17, S.18, S.19, V.32, T.33, D.34, T.39, N.123, K.124, D.126, I.127, S.146, A.147, R.148
- Ligands: ALF.1, MG.2, K.3
25 PLIP interactions:25 interactions with chain A- Hydrogen bonds: A:R.12, A:N.14, A:A.15, A:G.16, A:K.17, A:S.18, A:S.19, A:S.19, A:T.33, A:T.33, A:N.123, A:K.124, A:K.124, A:S.146, A:A.147, A:R.148, A:R.148
- Water bridges: A:S.18, A:D.34, A:T.39, A:G.61, A:R.148, A:R.148
- Salt bridges: A:K.17, A:D.126
GDP.10: 19 residues within 4Å:- Chain B: N.14, A.15, G.16, K.17, S.18, S.19, V.32, T.33, D.34, N.123, K.124, D.126, I.127, S.146, A.147, R.148
- Ligands: ALF.6, MG.7, K.8
22 PLIP interactions:22 interactions with chain B- Hydrogen bonds: B:N.14, B:A.15, B:G.16, B:K.17, B:S.18, B:S.19, B:S.19, B:T.33, B:T.33, B:T.39, B:N.123, B:K.124, B:K.124, B:S.146, B:A.147, B:R.148
- Water bridges: B:S.18, B:D.34, B:T.39, B:G.61
- Salt bridges: B:K.17, B:D.126
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Scrima, A. et al., Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element. Embo J. (2006)
- Release Date
- 2006-07-04
- Peptides
- tRNA modification GTPase trmE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 2 x SE: SELENIUM ATOM(Non-functional Binders)(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Scrima, A. et al., Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element. Embo J. (2006)
- Release Date
- 2006-07-04
- Peptides
- tRNA modification GTPase trmE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D