SMTL ID : 2gjz.7 (8 other biounits)

Structure of Catalytic Elimination Antibody 13G5 from a crystal in space group P2(1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-2-2-mer

Ligands

11 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.172 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.172 ZN.2: 4 residues within 4Å: Chain A: D.35, W.47, V.50, H.98 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.35, A:D.35, A:H.98, H2O.1 ZN.3: 2 residues within 4Å: Chain A: D.109, H.110 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.110 ZN.4: 4 residues within 4Å: Chain A: D.215 Chain B: D.156, R.193, H.194 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.215, B:D.156, B:H.194, H2O.1 ZN.5: 2 residues within 4Å: Chain C: H.31, N.33 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.31 ZN.6: 2 residues within 4Å: Chain B: E.192 Chain C: D.65 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Metal complexes: B:E.192, C:D.65 ZN.7: 3 residues within 4Å: Chain C: N.143, D.172 Chain D: H.172 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.172, H2O.1 ZN.8: 3 residues within 4Å: Chain C: D.156, R.193, H.194 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.156, C:H.194, H2O.1 ZN.9: 1 residues within 4Å: Chain C: H.98 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.98, H2O.1, H2O.1 ZN.10: 4 residues within 4Å: Chain D: D.35, W.47, V.50, H.98 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.35, D:D.35, D:H.98, H2O.1 ZN.11: 2 residues within 4Å: Chain D: D.109, H.110 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muller, R. et al., Bifunctional Catalysis of Proton Transfer at an Antibody Active Site. J.Am.Chem.Soc. (2007)

Release Date

2007-02-06

Peptides

Catalytic elimination antibody 13G5 heavy chain: AD
Catalytic elimination antibody 13G5 light chain: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
H

B
A

C
L

Catalytic elimination antibody 13G5 heavy chain

Catalytic elimination antibody 13G5 light chain

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