SMTL ID : 2gk6.1 (1 other biounit)

Structural and Functional insights into the human Upf1 helicase core

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.209, E.347 Ligands: ADP.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.209, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: P.204, G.205, K.208, Q.375, R.413, G.541, R.575 Ligands: ADP.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.205, A:Q.375 Salt bridges: A:K.208, A:R.413, A:R.575

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 15 residues within 4Å: Chain A: P.179, D.180, L.181, N.182, Q.185, G.205, T.206, G.207, K.208, T.209, V.210, K.243, Y.412 Ligands: MG.1, PO4.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.182, A:N.182, A:Q.185, A:Q.185, A:G.205, A:T.206, A:G.207, A:K.208, A:T.209, A:T.209, A:V.210 Salt bridges: A:K.208, A:K.243 pi-Stacking: A:Y.412, A:Y.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, Z. et al., Structural and functional insights into the human Upf1 helicase core. Embo J. (2007)

Release Date

2007-01-09

Peptides

Regulator of nonsense transcripts 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Regulator of nonsense transcripts 1

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