SMTL ID : 2gl0.1

Structure of PAE2307 in complex with adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-hexamer

Ligands

6 x ADN: ADENOSINE(Non-covalent)

ADN.1: 11 residues within 4Å: Chain A: H.27, F.28, H.85 Chain B: N.20, W.95, I.97, T.116, A.117, N.118, V.163, Y.165 15 PLIP interactions: 6 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:F.28, B:N.20, B:A.117, B:N.118, B:N.118, B:Y.165, B:Y.165 Water bridges: A:I.29, A:A.55, A:H.85 pi-Stacking: A:F.28, A:F.28, B:W.95, B:W.95, B:W.95 ADN.2: 11 residues within 4Å: Chain B: H.27, F.28, H.85 Chain C: N.20, W.95, I.97, T.116, A.117, N.118, V.163, Y.165 13 PLIP interactions: 8 interactions with chain C, 5 interactions with chain B Hydrogen bonds: C:N.20, C:A.117, C:N.118, C:Y.165, C:Y.165, B:F.28 pi-Stacking: C:W.95, C:W.95, C:W.95, B:F.28, B:F.28 Water bridges: B:S.56, B:H.85 ADN.4: 12 residues within 4Å: Chain A: N.20, W.95, I.97, T.116, A.117, N.118, V.163, Y.165 Chain C: H.27, F.28, S.56, H.85 15 PLIP interactions: 9 interactions with chain A, 6 interactions with chain C Hydrogen bonds: A:N.20, A:A.117, A:N.118, A:N.118, A:Y.165, A:Y.165, C:F.28, C:S.56, C:S.56 pi-Stacking: A:W.95, A:W.95, A:W.95, C:F.28, C:F.28 Water bridges: C:I.29 ADN.6: 12 residues within 4Å: Chain D: H.27, F.28, S.56, H.85 Chain E: N.20, W.95, I.97, T.116, A.117, N.118, V.163, Y.165 12 PLIP interactions: 4 interactions with chain D, 8 interactions with chain E Hydrogen bonds: D:F.28, E:N.20, E:T.116, E:A.117, E:N.118, E:Y.165 Water bridges: D:I.29 pi-Stacking: D:F.28, D:F.28, E:W.95, E:W.95, E:W.95 ADN.7: 11 residues within 4Å: Chain E: H.27, F.28, H.85 Chain F: N.20, W.95, I.97, T.116, A.117, N.118, V.163, Y.165 12 PLIP interactions: 9 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:N.20, F:T.116, F:A.117, F:N.118, F:N.118, F:Y.165, E:F.28 pi-Stacking: F:W.95, F:W.95, F:W.95, E:F.28, E:F.28 ADN.8: 11 residues within 4Å: Chain D: N.20, W.95, I.97, T.116, A.117, N.118, V.163, Y.165 Chain F: H.27, F.28, H.85 15 PLIP interactions: 9 interactions with chain D, 6 interactions with chain F Hydrogen bonds: D:N.20, D:T.116, D:A.117, D:N.118, D:N.118, D:Y.165 pi-Stacking: D:W.95, D:W.95, D:W.95, F:F.28, F:F.28 Water bridges: F:I.29, F:S.56, F:S.56, F:H.85

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: R.111, I.112, F.113 Chain B: R.111 Chain C: R.111, F.113 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 2 interactions with chain A Salt bridges: B:R.111, C:R.111, A:R.111 Water bridges: A:I.112 PO4.5: 3 residues within 4Å: Chain D: R.111 Chain E: R.111 Chain F: R.111 5 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D, 1 interactions with chain F Water bridges: E:I.112, D:I.112 Salt bridges: E:R.111, D:R.111, F:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lott, J.S. et al., The Structure of an Ancient Conserved Domain Establishes a Structural Basis for Stable Histidine Phosphorylation and Identifies a New Family of Adenosine-specific Kinases. J.Biol.Chem. (2006)

Release Date

2006-06-06

Peptides

conserved hypothetical protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

conserved hypothetical protein

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