SMTL ID : 2gl5.1

Crystal Structure of Putative Dehydratase from Salmonella Thyphimurium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.224, A:E.250, A:E.276, H2O.11, H2O.11, H2O.11 MG.2: 3 residues within 4Å: Chain B: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.224, B:E.250, B:E.276, H2O.23, H2O.23, H2O.23 MG.4: 3 residues within 4Å: Chain C: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.224, C:E.250, C:E.276, H2O.35, H2O.35, H2O.35 MG.5: 3 residues within 4Å: Chain D: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.224, D:E.250, D:E.276, H2O.47, H2O.47, H2O.47 MG.7: 3 residues within 4Å: Chain E: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:E.224, E:E.250, E:E.276, H2O.59, H2O.59, H2O.59 MG.8: 3 residues within 4Å: Chain F: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:E.224, F:E.250, F:E.276, H2O.71, H2O.71, H2O.71 MG.10: 3 residues within 4Å: Chain G: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:E.224, G:E.250, G:E.276, H2O.83, H2O.83, H2O.83 MG.11: 3 residues within 4Å: Chain H: E.224, E.250, E.276 6 PLIP interactions: 3 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:E.224, H:E.250, H:E.276, H2O.95, H2O.95, H2O.95

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: L.256 Chain B: G.91, G.92, Y.96, Y.279, T.280, W.282, G.283 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.279 Water bridges: A:G.91 GOL.6: 8 residues within 4Å: Chain C: L.256 Chain D: G.91, G.92, Y.96, Y.279, T.280, W.282, G.283 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Y.279 Water bridges: C:G.91 GOL.9: 8 residues within 4Å: Chain E: L.256 Chain F: G.91, G.92, Y.96, Y.279, T.280, W.282, G.283 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Water bridges: E:G.91 Hydrogen bonds: F:Y.279 GOL.12: 8 residues within 4Å: Chain G: L.256 Chain H: G.91, G.92, Y.96, Y.279, T.280, W.282, G.283 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:Y.279 Water bridges: G:G.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Putative Dehydratase from Salmonella Thyphimurium Lt2. To be Published

Release Date

2006-04-18

Peptides

putative dehydratase protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

putative dehydratase protein