SMTL ID : 2gl9.1

Crystal Structure of Glycosylasparaginase-Substrate Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 7 residues within 4Å: Chain A: W.11, F.13, S.50 Chain B: C.1, G.53, H.54 Ligands: ASN.2 5 PLIP interactions: 2 Ligand-Ligand interactions, 3 interactions with chain A Water bridges: N.2, N.2, A:E.48, A:S.50 Hydrogen bonds: A:S.50 NAG.3: 7 residues within 4Å: Chain C: W.11, F.13, S.50 Chain D: C.1, G.53, H.54 Ligands: ASN.4 6 PLIP interactions: 2 Ligand-Ligand interactions, 3 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: N.4 Hydrogen bonds: N.4, C:S.50, D:C.1 Water bridges: C:E.48, C:S.50

2 x ASN: ASPARAGINE(Non-covalent)(Covalent)

ASN.2: 11 residues within 4Å: Chain B: C.1, T.19, G.21, R.29, G.31, D.32, S.33, T.52, G.53, G.55 Ligands: NAG.1 9 PLIP interactions: 1 Ligand-Ligand interactions, 8 interactions with chain B Hydrogen bonds: N.2, B:M.22, B:D.32, B:D.32, B:G.53, B:G.53, B:G.55 Water bridges: B:G.31 Salt bridges: B:R.29 ASN.4: 12 residues within 4Å: Chain D: C.1, T.19, G.21, M.22, R.29, G.31, D.32, S.33, T.52, G.53, G.55 Ligands: NAG.3 13 PLIP interactions: 11 interactions with chain D, 2 Ligand-Ligand interactions Hydrogen bonds: D:C.1, D:T.19, D:M.22, D:D.32, D:D.32, D:D.32, D:G.53, D:G.53, D:G.55, N.4, N.4 Water bridges: D:G.31 Salt bridges: D:R.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Crystallographic snapshot of a productive glycosylasparaginase-substrate complex. J.Mol.Biol. (2007)

Release Date

2007-02-13

Peptides

Glycosylasparaginase alpha chain: AC
Glycosylasparaginase beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Glycosylasparaginase alpha chain

Glycosylasparaginase beta chain

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