SMTL ID : 2glu.1 (1 other biounit)

The crystal structure of YcgJ protein from Bacillus subitilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.6, H.7, L.10, H.34, R.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.6 Salt bridges: A:H.7, A:H.34, A:R.94 SO4.2: 7 residues within 4Å: Chain A: H.6, H.7, H.8, S.9, Y.95, W.174, L.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.8, A:S.9, A:S.9 Salt bridges: A:H.6, A:H.8 SO4.3: 7 residues within 4Å: Chain A: Y.95, H.98, H.99, H.125, D.145, H.148 Ligands: SAM.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.125, A:D.145, A:H.148 Water bridges: A:S.147 Salt bridges: A:H.98, A:H.99 SO4.4: 1 residues within 4Å: Chain A: H.7 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.7

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.5: 18 residues within 4Å: Chain A: G.29, A.30, G.31, H.34, T.35, D.50, A.51, T.52, M.55, G.76, T.77, A.78, E.79, R.94, Y.95, H.99, F.100 Ligands: SO4.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.29, A:H.34, A:A.51, A:T.52, A:T.52, A:A.78, A:E.79 Salt bridges: A:R.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burke, T. et al., The crystal structure of YcgJ protein from Bacillus subitilis. To be Published

Release Date

2006-04-18

Peptides

ycgJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ycgJ

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