SMTL ID : 2gmk.1

Crystal structure of onconase double mutant with spontaneously-assembled (AMP) 4 stack

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)(Non-functional Binders)

AMP.1: 4 residues within 4Å: Chain A: K.9, H.29, K.31 Ligands: AMP.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.29 Water bridges: A:K.9, A:K.9, A:L.27, A:K.31, A:N.56, A:N.56 Salt bridges: A:K.9, A:K.31 AMP.2: 8 residues within 4Å: Chain A: Q.1, K.9, H.10, H.97, F.98, V.99 Ligands: AMP.1, AMP.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:F.98 Water bridges: A:Q.1, A:Q.1, A:K.31, A:N.34, A:V.99, A:V.99 Salt bridges: A:K.9, A:H.10, A:K.31, A:H.97 AMP.3: 3 residues within 4Å: Chain A: V.99 Ligands: AMP.2, AMP.4 No protein-ligand interaction detected (PLIP) AMP.4: 1 residues within 4Å: Ligands: AMP.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:V.99, A:C.104, A:C.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.E. et al., Structural basis for catalysis by onconase. J.Mol.Biol. (2008)

Release Date

2006-04-25

Peptides

P-30 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

P-30 protein