SMTL ID : 2go4.2 (2 other biounits)

Crystal structure of Aquifex aeolicus LpxC complexed with TU-514

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.74, T.179, H.226, D.230 Ligands: TUX.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230 ZN.2: 2 residues within 4Å: Chain A: H.58, H.188 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.58, A:H.188

1 x TUX: 1,5-ANHYDRO-2-C-(CARBOXYMETHYL-N-HYDROXYAMIDE)-2-DEOXY-3-O-MYRISTOYL-D-GLUCITOL(Non-covalent)

TUX.3: 20 residues within 4Å: Chain A: I.18, H.19, H.58, E.73, H.74, T.179, F.180, E.185, I.186, I.189, G.195, G.198, S.199, L.200, T.203, H.226, K.227, D.230, H.253 Ligands: ZN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.18, A:T.179, A:L.200 Hydrogen bonds: A:K.227, A:H.253 Water bridges: A:H.58 Salt bridges: A:H.19, A:H.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gennadios, H.A. et al., Mechanistic Inferences from the Binding of Ligands to LpxC, a Metal-Dependent Deacetylase. Biochemistry (2006)

Release Date

2006-07-04

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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