SMTL ID : 2gp5.1 (1 other biounit)

Crystal structure of catalytic core domain of jmjd2A complexed with alpha-Ketoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.233, H.239, C.305, C.307, R.308 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.233, A:H.239, A:C.305, A:C.307

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.187, E.189, H.275 Ligands: AKG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.187, A:E.189, A:H.275

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.3: 10 residues within 4Å: Chain A: Y.131, F.184, H.187, E.189, S.195, N.197, K.205, W.207, H.275 Ligands: FE2.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.184 Hydrogen bonds: A:E.189, A:S.195, A:N.197 Salt bridges: A:K.205, A:H.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Structural insights into histone demethylation by JMJD2 family members. Cell(Cambridge,Mass.) (2006)

Release Date

2006-05-23

Peptides

Jumonji domain-containing protein 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Jumonji domain-containing protein 2A

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