SMTL ID : 2gq9.1

Structure of SYE1, an OYE homologue from S. oneidensis, in complex with p-hydroxybenzaldehyde

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.301, R.323, H.344 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.301, A:R.301 Salt bridges: A:R.301, A:R.323, A:H.344

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 21 residues within 4Å: Chain A: P.23, P.24, M.25, T.26, G.58, Q.100, H.181, N.184, R.233, V.272, W.274, A.299, G.300, R.301, F.321, G.322, R.323, P.324, L.349, F.350 Ligands: HBA.3 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:M.25, A:W.274, A:R.323, A:L.349, A:F.350 Hydrogen bonds: A:P.24, A:T.26, A:T.26, A:G.58, A:Q.100, A:Q.100, A:N.184, A:R.233, A:R.233, A:R.301, A:G.322, A:R.323 Water bridges: A:G.300, A:R.301, A:Y.302, A:Y.302, A:Y.302 Salt bridges: A:R.323

2 x HBA: P-HYDROXYBENZALDEHYDE(Non-covalent)

HBA.3: 9 residues within 4Å: Chain A: T.26, W.102, H.181, N.184, Y.186, D.273, W.274, F.350 Ligands: FMN.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.102, A:Y.186 Hydrogen bonds: A:H.181, A:N.184 HBA.4: 6 residues within 4Å: Chain A: S.28, Y.68, A.69, W.70, F.132, F.350 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.68, A:F.132, A:F.132, A:F.132, A:F.350, A:F.350 Hydrogen bonds: A:S.28, A:S.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van den Hemel, D. et al., Ligand-induced conformational changes in the capping subdomain of a bacterial old yellow enzyme homologue and conserved sequence fingerprints provide new insights into substrate binding. J.Biol.Chem. (2006)

Release Date

2006-07-25

Peptides

oxidoreductase, FMN-binding: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

oxidoreductase, FMN-binding

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