SMTL ID : 2gsw.2 (1 other biounit)

Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 16 residues within 4Å: Chain A: T.9, R.11, G.14, R.15, T.16, P.72, E.73, Y.74, H.75, S.76, V.104, A.105, G.106, G.107 Chain B: F.42, D.87 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.9, A:R.15, A:R.15, A:R.15, A:T.16, A:T.16, A:E.73, A:E.73, A:E.73, A:Y.74, A:H.75, A:S.76, A:G.106 Salt bridges: A:R.11 pi-Stacking: A:Y.74 Hydrophobic interactions: B:F.42 FMN.2: 17 residues within 4Å: Chain A: F.42, D.87 Chain B: T.9, R.11, G.14, R.15, T.16, P.72, E.73, Y.74, H.75, S.76, V.104, A.105, G.106, G.107, G.110 18 PLIP interactions: 1 interactions with chain A, 17 interactions with chain B Hydrophobic interactions: A:F.42, B:Y.74, B:Y.74 Hydrogen bonds: B:T.9, B:R.15, B:R.15, B:R.15, B:T.16, B:T.16, B:E.73, B:E.73, B:E.73, B:Y.74, B:H.75, B:S.76, B:G.106 Salt bridges: B:R.11 pi-Stacking: B:Y.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., Crystal Structure of the Putative NADPH-dependent Azobenzene FMN-Reductase YhdA from Bacillus subtilis, Northeast Structural Genomics Target SR135. To be Published

Release Date

2006-05-09

Peptides

yhdA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

yhdA

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