SMTL ID : 2gta.1

Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR428.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: E.37, E.40, L.41, E.66, D.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.40, A:L.41, A:E.66 NA.2: 4 residues within 4Å: Chain B: E.37, E.40, E.66, D.69 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.37, B:E.40, B:E.66, B:E.66 NA.3: 4 residues within 4Å: Chain C: E.37, E.40, E.66, D.69 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.37, C:E.40, C:E.66 NA.4: 4 residues within 4Å: Chain D: E.37, E.40, E.66, D.69 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.69, D:D.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vorobiev, S.M. et al., Crystal Structure of the putative pyrophosphatase YPJD from Bacillus subtilis. To be Published

Release Date

2006-05-23

Peptides

Hypothetical protein ypjD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Hypothetical protein ypjD