SMTL ID : 2gti.1

mutation of MHV coronavirus non-structural protein nsp15 (F307L)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.186, R.187, T.188 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: P.152, Q.153, R.154, F.223, Q.225 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: N.123, G.124, A.125, L.126, E.127 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: W.82, Y.100, K.101 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Ligands: SO4.15, SO4.25, SO4.35, SO4.45, SO4.55 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: S.236, E.237 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: E.163, T.233, R.235 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: K.366, M.368, T.369 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: S.186, R.187, T.188 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: P.152, Q.153, R.154, F.223, Q.225 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain B: N.123, G.124, A.125, L.126, E.127 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: W.82, Y.100, K.101 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Ligands: SO4.5, SO4.25, SO4.35, SO4.45, SO4.55 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: S.236, E.237 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: E.163, T.233, R.235 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: K.366, M.368, T.369 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: S.186, R.187, T.188 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain C: P.152, Q.153, R.154, F.223, Q.225 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain C: N.123, G.124, A.125, L.126, E.127 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain C: W.82, Y.100, K.101 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Ligands: SO4.5, SO4.15, SO4.35, SO4.45, SO4.55 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain C: S.236, E.237 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain C: E.163, T.233, R.235 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain C: K.366, M.368, T.369 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain D: S.186, R.187, T.188 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain D: P.152, Q.153, R.154, F.223, Q.225 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain D: N.123, G.124, A.125, L.126, E.127 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain D: W.82, Y.100, K.101 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Ligands: SO4.5, SO4.15, SO4.25, SO4.45, SO4.55 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain D: S.236, E.237 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain D: E.163, T.233, R.235 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain D: K.366, M.368, T.369 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain E: S.186, R.187, T.188 Ligand excluded by PLIP SO4.42: 5 residues within 4Å: Chain E: P.152, Q.153, R.154, F.223, Q.225 Ligand excluded by PLIP SO4.43: 5 residues within 4Å: Chain E: N.123, G.124, A.125, L.126, E.127 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain E: W.82, Y.100, K.101 Ligand excluded by PLIP SO4.45: 5 residues within 4Å: Ligands: SO4.5, SO4.15, SO4.25, SO4.35, SO4.55 Ligand excluded by PLIP SO4.46: 2 residues within 4Å: Chain E: S.236, E.237 Ligand excluded by PLIP SO4.47: 3 residues within 4Å: Chain E: E.163, T.233, R.235 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain E: K.366, M.368, T.369 Ligand excluded by PLIP SO4.51: 3 residues within 4Å: Chain F: S.186, R.187, T.188 Ligand excluded by PLIP SO4.52: 5 residues within 4Å: Chain F: P.152, Q.153, R.154, F.223, Q.225 Ligand excluded by PLIP SO4.53: 5 residues within 4Å: Chain F: N.123, G.124, A.125, L.126, E.127 Ligand excluded by PLIP SO4.54: 3 residues within 4Å: Chain F: W.82, Y.100, K.101 Ligand excluded by PLIP SO4.55: 5 residues within 4Å: Ligands: SO4.5, SO4.15, SO4.25, SO4.35, SO4.45 Ligand excluded by PLIP SO4.56: 2 residues within 4Å: Chain F: S.236, E.237 Ligand excluded by PLIP SO4.57: 3 residues within 4Å: Chain F: E.163, T.233, R.235 Ligand excluded by PLIP SO4.58: 3 residues within 4Å: Chain F: K.366, M.368, T.369 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 5 residues within 4Å: Chain A: F.44, K.45, F.59, W.87, D.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.45, A:D.92 GOL.10: 5 residues within 4Å: Chain A: D.167 Chain C: R.286, K.289, N.313, S.314 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.286, C:R.286, C:K.289, C:K.289, C:N.313, A:D.167 GOL.19: 5 residues within 4Å: Chain B: F.44, K.45, F.59, W.87, D.92 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.45, B:D.92 GOL.20: 5 residues within 4Å: Chain A: R.286, K.289, N.313, S.314 Chain B: D.167 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.286, A:R.286, A:K.289, A:K.289, A:N.313, B:D.167 GOL.29: 5 residues within 4Å: Chain C: F.44, K.45, F.59, W.87, D.92 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.45, C:D.92 GOL.30: 5 residues within 4Å: Chain B: R.286, K.289, N.313, S.314 Chain C: D.167 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.286, B:R.286, B:K.289, B:K.289, B:N.313, C:D.167 GOL.39: 5 residues within 4Å: Chain D: F.44, K.45, F.59, W.87, D.92 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.45, D:D.92 GOL.40: 5 residues within 4Å: Chain D: D.167 Chain F: R.286, K.289, N.313, S.314 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:R.286, F:R.286, F:K.289, F:K.289, F:N.313, D:D.167 GOL.49: 5 residues within 4Å: Chain E: F.44, K.45, F.59, W.87, D.92 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.45, E:D.92 GOL.50: 5 residues within 4Å: Chain D: R.286, K.289, N.313, S.314 Chain E: D.167 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:R.286, D:R.286, D:K.289, D:K.289, D:N.313, E:D.167 GOL.59: 5 residues within 4Å: Chain F: F.44, K.45, F.59, W.87, D.92 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:K.45, F:D.92 GOL.60: 5 residues within 4Å: Chain E: R.286, K.289, N.313, S.314 Chain F: D.167 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain E Hydrogen bonds: F:D.167, E:R.286, E:R.286, E:K.289, E:K.289, E:N.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., New Antiviral Target Revealed by the Hexameric Structure of Mouse Hepatitis Virus Nonstructural Protein nsp15. J.Virol. (2006)

Release Date

2006-08-15

Peptides

Replicase polyprotein 1ab: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Replicase polyprotein 1ab