SMTL ID : 2gum.1

Crystal structure of the extracellular domain of glycoprotein B from Herpes Simplex Virus type I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: F.25, Q.27, N.438, R.441 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.27, A:N.438, A:N.438, A:R.441, A:R.441 NA.2: 4 residues within 4Å: Chain B: F.25, Q.27, N.438, R.441 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.27, B:N.438, B:N.438, B:R.441 NA.3: 5 residues within 4Å: Chain B: I.569, D.570, L.571 Chain C: R.29, W.426 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:R.29, B:D.570, B:L.571 NA.4: 3 residues within 4Å: Chain C: F.25, Q.27, N.438 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.27, C:N.438, C:N.438, C:R.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heldwein, E.E. et al., Crystal structure of glycoprotein B from herpes simplex virus 1. Science (2006)

Release Date

2006-07-25

Peptides

Glycoprotein B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Glycoprotein B

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