SMTL ID : 2gux.1

Selenomethionine derivative of griffithsin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.85, G.125, D.126, Y.127, D.129 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.125, A:D.126, A:Y.127 Water bridges: B:G.29 SO4.2: 5 residues within 4Å: Chain B: Y.85, G.125, D.126, Y.127, D.129 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.85, B:G.125, B:D.126, B:Y.127 Water bridges: A:G.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ziolkowska, N.E. et al., Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. Structure (2006)

Release Date

2006-08-01

Peptides

griffithsin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

griffithsin