SMTL ID : 2gvd.1

Complex Of Gs- With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With TNP-ATP and Mn

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.41, D.85 Ligands: MN.2, 128.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.85 MN.2: 5 residues within 4Å: Chain A: D.41, I.42, D.85 Ligands: MN.1, 128.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.41, A:D.41, A:I.42, A:D.85 MN.5: 4 residues within 4Å: Chain C: S.54, T.204, D.223 Ligands: GSP.7 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.54, C:T.204

1 x FKP: METHYLPIPERAZINOFORSKOLIN(Non-covalent)

FKP.3: 17 residues within 4Å: Chain A: F.39, L.83, C.86, Y.88, D.150, V.151, W.152, S.153, V.156, T.157, N.160 Chain B: F.26, K.27, Y.30, I.71, G.72, S.73 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.39, A:L.83, A:V.156, B:F.26, B:K.27, B:Y.30, B:Y.30 Hydrogen bonds: A:V.151, A:S.153, A:N.160, B:S.73

1 x 128: SPIRO(2,4,6-TRINITROBENZENE[1,2A]-2O',3O'-METHYLENE-ADENINE-TRIPHOSPHATE(Non-covalent)

128.4: 20 residues within 4Å: Chain A: I.42, G.44, F.45, T.46, A.54, L.57, V.58, L.61, G.84, D.85, R.129 Chain B: F.20, W.151, G.152, N.153, N.156, S.159, K.196 Ligands: MN.1, MN.2 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:N.156, B:S.159, A:G.44, A:F.45, A:T.46 Salt bridges: B:K.196, B:K.196, B:K.196, A:R.129 Hydrophobic interactions: A:F.45

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain C: A.48, A.249, R.265 Ligand excluded by PLIP

1 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)

GSP.7: 25 residues within 4Å: Chain C: A.48, G.49, E.50, S.51, G.52, K.53, S.54, T.55, D.173, L.198, R.199, C.200, R.201, T.204, V.224, G.225, G.226, N.292, K.293, D.295, L.296, C.365, A.366, V.367 Ligands: MN.5 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:E.50, C:S.51, C:G.52, C:K.53, C:K.53, C:K.53, C:S.54, C:T.55, C:D.173, C:R.199, C:C.200, C:T.204, C:G.226, C:N.292, C:K.293, C:K.293, C:A.366, C:V.367 Water bridges: C:Q.227 Salt bridges: C:K.53, C:D.295 pi-Cation interactions: C:K.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mou, T.-C. et al., Broad specificity of Mammalian adenylyl cyclase for interaction with 2',3'-substituted purine- and pyrimidine nucleotide inhibitors. Mol.Pharmacol. (2006)

Release Date

2006-07-04

Peptides

Adenylate cyclase type 5: A
Adenylate cyclase type 2: B
Guanine nucleotide-binding protein G(s), alpha subunit: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Adenylate cyclase type 5

Adenylate cyclase type 2

Guanine nucleotide-binding protein G(s), alpha subunit

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