SMTL ID : 2gvj.1

Crystal Structure of Human NMPRTase in complex with FK866

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x DGB: (2E)-N-{4-[1-(BENZENECARBONYL)PIPERIDIN-4-YL]BUTYL}-3-(PYRIDIN-3-YL)PROP-2-ENAMIDE(Non-covalent)

DGB.1: 20 residues within 4Å: Chain A: D.16, Y.18 Chain B: Y.188, K.189, H.191, F.193, R.196, D.219, V.242, A.244, S.275, P.307, R.311, R.349, V.350, I.351, E.376, N.377, I.378, A.379 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.193, B:V.242, B:V.242, B:R.349, B:R.349, B:I.351, B:A.379 Hydrogen bonds: B:S.275 Water bridges: B:H.191, B:D.219, B:D.219, B:D.219, B:R.311, B:R.311 pi-Stacking: B:F.193, A:Y.18 DGB.2: 20 residues within 4Å: Chain A: Y.188, K.189, H.191, F.193, R.196, D.219, V.242, A.244, S.275, P.307, I.309, R.311, R.349, V.350, E.376, N.377, I.378, A.379 Chain B: D.16, Y.18 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.193, A:D.219, A:V.242, A:V.242, A:R.349, A:R.349, A:A.379, B:Y.18 Hydrogen bonds: A:S.275 Water bridges: A:R.196, A:D.219, A:S.241, A:A.245 pi-Stacking: A:F.193, B:Y.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khan, J.A. et al., Molecular basis for the inhibition of human NMPRTase, a novel target for anticancer agents. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-06-20

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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