SMTL ID : 2gy5.1

Tie2 Ligand-Binding Domain Crystal Structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.118

4 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)

NDG.2: 3 residues within 4Å: Chain A: E.40, M.43, N.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.136 NDG.3: 5 residues within 4Å: Chain A: D.375, N.377, T.379, V.384, I.386 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.379 Hydrogen bonds: A:N.377 NDG.4: 4 residues within 4Å: Chain A: H.336, V.399, N.416 Ligands: NDG.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.399 Hydrogen bonds: A:N.416 Salt bridges: A:H.336 NDG.5: 1 residues within 4Å: Ligands: NDG.4 No protein-ligand interaction detected (PLIP)

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain A: R.90, R.92 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.90, A:R.92 SO4.7: 7 residues within 4Å: Chain A: S.101, K.127, R.170, Y.171, G.173, G.174, T.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.101, A:Y.171, A:T.178 Salt bridges: A:K.127 SO4.8: 1 residues within 4Å: Chain A: R.90 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.90 SO4.9: 1 residues within 4Å: Chain A: T.327 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barton, W.A. et al., Crystal structures of the Tie2 receptor ectodomain and the angiopoietin-2-Tie2 complex. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-06-06

Peptides

Angiopoietin-1 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Angiopoietin-1 receptor

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