SMTL ID : 2h0j.1 (1 other biounit)

Crystal structure of PucM in the presence of 5,6-diaminouracil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x URN: 5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)

URN.1: 11 residues within 4Å: Chain A: H.14, R.49, H.105, P.107, Y.118 Chain C: H.14, R.49, H.105, P.107, Y.118 Ligands: URN.3 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:R.49, A:R.49, A:Y.118, A:Y.118, C:R.49, C:R.49 URN.2: 11 residues within 4Å: Chain B: H.14, R.49, H.105, P.107, Y.118 Chain D: H.14, R.49, H.105, P.107, Y.118 Ligands: URN.4 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:R.49, B:R.49, B:Y.118, B:Y.118, D:R.49, D:R.49 URN.3: 11 residues within 4Å: Chain A: H.14, R.49, H.105, P.107, Y.118 Chain C: H.14, R.49, H.105, P.107, Y.118 Ligands: URN.1 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:R.49, A:R.49, A:Y.118, C:R.49, C:R.49, C:Y.118 URN.4: 11 residues within 4Å: Chain B: H.14, R.49, H.105, P.107, Y.118 Chain D: H.14, R.49, H.105, P.107, Y.118 Ligands: URN.2 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:R.49, B:R.49, B:Y.118, D:R.49, D:R.49, D:Y.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jung, D.-K. et al., Structural and functional analysis of PucM, a hydrolase in the ureide pathway and a member of the transthyretin-related protein family. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-06-27

Peptides

Transthyretin-like protein pucM: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Transthyretin-like protein pucM

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