SMTL ID : 2h1t.1

Crystal structure of a duf1089 family protein (pa1994) from pseudomonas aeruginosa at 1.80 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: R.6, L.7, Y.8 Chain B: R.187, L.188 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.187, B:L.188, A:R.6 EDO.2: 4 residues within 4Å: Chain A: E.32, D.49, Y.50, V.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.32, A:E.32, A:D.49 Water bridges: A:Y.50 EDO.3: 6 residues within 4Å: Chain A: W.21, R.36 Chain B: P.45, E.68, S.69, E.70 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.45 Water bridges: B:S.69, B:E.70, B:G.72, A:R.36 EDO.5: 5 residues within 4Å: Chain B: E.40, W.106, Y.133, E.135 Ligands: MPD.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.40 EDO.6: 6 residues within 4Å: Chain B: E.32, D.49, Y.50, R.51, V.64, H.66 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.32, B:E.32, B:R.51 EDO.7: 2 residues within 4Å: Chain B: D.5, L.7 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.7 EDO.8: 4 residues within 4Å: Chain B: D.39, R.41, S.42, T.71 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.42 Water bridges: B:D.39, B:R.41, B:S.69, B:S.69, B:T.71 EDO.9: 3 residues within 4Å: Chain B: D.152, A.153, S.154 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.153, B:S.154 EDO.10: 7 residues within 4Å: Chain B: I.116, R.117, A.153, D.173, E.174, Q.175, G.176 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.173 Water bridges: B:R.150, B:Y.156

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 5 residues within 4Å: Chain A: Y.133, M.144, Y.158, N.160, F.166 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.133, A:Y.158 Hydrogen bonds: A:Y.158, A:N.160 MPD.11: 6 residues within 4Å: Chain B: W.106, Y.133, Y.158, N.160, F.166 Ligands: EDO.5 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.106, B:Y.133, B:Y.158, B:F.166 Hydrogen bonds: B:N.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bakolitsa, C. et al., The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism. Acta Crystallogr.,Sect.F (2010)

Release Date

2006-05-30

Peptides

Hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein