SMTL ID : 2h2a.1

Crystal structure of Nicotinic acid mononucleotide adenylyltransferase from Staphylococcus aureus: product bound form 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.71 Ligands: GOL.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.71, A:D.71, H2O.1, H2O.4, H2O.4

2 x DND: NICOTINIC ACID ADENINE DINUCLEOTIDE(Non-covalent)

DND.2: 27 residues within 4Å: Chain A: Y.7, G.8, G.9, Q.10, F.11, H.15, A.17, H.18, V.21, S.42, P.43, L.44, K.45, S.83, Y.84, T.85, F.103, I.105, G.106, D.108, Q.109, W.116, Y.117, N.132, R.133, V.152, I.154 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:P.43, A:P.43, A:L.44 Hydrogen bonds: A:G.8, A:Q.10, A:F.11, A:H.18, A:S.42, A:T.85, A:T.85, A:G.106, A:D.108, A:Q.109, A:Y.117, A:R.133, A:V.152, A:I.154 Water bridges: A:G.9, A:G.9, A:K.45, A:K.45, A:Y.86, A:V.104, A:K.115, A:R.133, A:D.134, A:V.152, A:V.152 Salt bridges: A:H.18, A:K.45, A:K.45 pi-Stacking: A:W.116, A:W.116 pi-Cation interactions: A:R.133 DND.4: 27 residues within 4Å: Chain B: Y.7, G.8, G.9, Q.10, F.11, A.17, H.18, V.21, S.42, P.43, L.44, K.45, S.83, Y.84, T.85, F.103, I.105, G.106, D.108, Q.109, W.116, Y.117, V.131, N.132, R.133, V.152, I.154 34 PLIP interactions: 34 interactions with chain B Hydrophobic interactions: B:P.43, B:P.43, B:L.44 Hydrogen bonds: B:G.8, B:Q.10, B:F.11, B:H.18, B:S.42, B:T.85, B:T.85, B:G.106, B:D.108, B:Q.109, B:Y.117, B:R.133, B:V.152, B:I.154 Water bridges: B:G.9, B:K.45, B:K.45, B:E.76, B:Y.86, B:V.104, B:K.115, B:R.133, B:V.152, B:V.152, B:V.152 Salt bridges: B:H.18, B:K.45, B:K.45 pi-Stacking: B:W.116, B:W.116 pi-Cation interactions: B:R.133

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.33, Y.35, D.71 Ligands: CA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, S. et al., Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Staphyloccocus aureus: Structural Basis for NaAD Interaction in Functional Dimer. J.Mol.Biol. (2006)

Release Date

2006-08-08

Peptides

Probable nicotinate-nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable nicotinate-nucleotide adenylyltransferase

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