SMTL ID : 2h39.1

Crystal Structure of an ADP-Glucose Phosphorylase from Arabidopsis thaliana with bound ADP-Glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.63, C.66, H.133, H.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.66, A:H.133, A:H.184 ZN.2: 4 residues within 4Å: Chain A: C.216, C.219, H.255, H.310 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.216, A:C.219, A:H.255, A:H.310 ZN.5: 4 residues within 4Å: Chain B: C.63, C.66, H.133, H.184 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.63, B:C.66, B:H.133, B:H.184 ZN.6: 4 residues within 4Å: Chain B: C.216, C.219, H.255, H.310 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.216, B:C.219, B:H.255, B:H.310

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: I.156, F.259, H.260, T.296 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: I.156, F.259, H.260, T.296 Ligand excluded by PLIP

2 x ADQ: ADENOSINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

ADQ.4: 25 residues within 4Å: Chain A: F.65, E.72, C.73, A.74, I.92, E.93, N.94, L.95, Y.96, F.171, N.173, G.179, A.180, S.181, M.182, Q.188 Chain B: R.41, R.44, G.321, V.322, G.323, G.324, F.325, E.326, I.333 31 PLIP interactions: 15 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:R.41, B:R.44, B:G.323, B:F.325, A:E.72, A:A.74, A:N.94, A:L.95, A:Y.96, A:Y.96, A:N.173, A:G.179, A:S.181, A:M.182, A:Q.188, A:Q.188 Water bridges: B:R.41, B:R.44, B:S.320, B:S.320, B:S.320, B:S.320, B:I.333, A:N.173 Salt bridges: B:R.41, B:R.41, B:R.44, B:R.44 pi-Stacking: A:F.65, A:F.65, A:Y.96 ADQ.8: 27 residues within 4Å: Chain A: R.41, R.44, G.321, V.322, G.323, G.324, F.325, E.326, I.333 Chain B: P.64, F.65, E.72, C.73, A.74, I.92, E.93, N.94, L.95, Y.96, V.126, F.171, N.173, G.179, A.180, S.181, M.182, Q.188 28 PLIP interactions: 16 interactions with chain B, 12 interactions with chain A Hydrogen bonds: B:E.72, B:A.74, B:N.94, B:L.95, B:Y.96, B:N.173, B:G.179, B:S.181, B:M.182, B:Q.188, B:Q.188, A:R.41, A:R.41, A:R.44, A:G.323, A:F.325, A:E.326 Water bridges: B:N.173, B:S.181, B:S.181, A:R.44, A:S.320, A:G.321 pi-Stacking: B:F.65, B:F.65 Salt bridges: A:R.41, A:R.44, A:R.44

Links

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Citation

McCoy, J.G. et al., Crystal Structure of an ADP-Glucose Phosphorylase from Arabidopsis thaliana with bound ADP-Glucose. To be Published

Release Date

2006-06-13

Peptides

Probable galactose-1-phosphate uridyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable galactose-1-phosphate uridyl transferase