SMTL ID : 2h3d.1

Crystal Structure of Mouse Nicotinamide Phosphoribosyltransferase/Visfatin/Pre-B Cell Colony Enhancing Factor in Complex with Nicotinamide Mononuleotide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.1: 12 residues within 4Å: Chain A: F.196, R.199, D.222, A.247, R.314, D.316, G.356, G.386, G.387 Chain B: D.19, Y.21, R.395 12 PLIP interactions: 5 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:Y.21, B:Y.21, A:F.196 Water bridges: B:R.395, B:R.395 Salt bridges: B:R.395 Hydrogen bonds: A:D.222, A:R.314, A:G.356, A:G.386, A:G.387 pi-Stacking: A:F.196 NMN.2: 12 residues within 4Å: Chain A: D.19, Y.21, R.395 Chain B: F.196, R.199, D.222, A.247, R.314, D.316, G.356, G.386, G.387 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.196, A:Y.21, A:Y.21 Hydrogen bonds: B:D.222, B:G.356, B:G.386, B:G.387 Water bridges: B:R.314, B:R.314 pi-Stacking: B:F.196 Salt bridges: A:R.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Structure of Nampt/PBEF/visfatin, a mammalian NAD(+) biosynthetic enzyme. Nat.Struct.Mol.Biol. (2006)

Release Date

2006-06-20

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase