SMTL ID : 2h9d.3 (3 other biounits)

Pyruvate-Bound Structure of the Isochorismate-Pyruvate Lyase from Pseudomonas aerugionsa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

6 x PYR: PYRUVIC ACID(Non-covalent)

PYR.1: 6 residues within 4Å: Chain A: R.31, V.35, M.57, Y.86, I.87, Q.90 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.87 Water bridges: A:R.53, A:Q.90, B:R.14 Salt bridges: A:R.31 PYR.2: 8 residues within 4Å: Chain A: I.17 Chain B: R.31, V.35, P.49, M.57, I.83, Y.86, Q.90 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.17, B:P.49 Hydrogen bonds: B:I.83, B:Q.90 Salt bridges: B:R.31 PYR.3: 8 residues within 4Å: Chain C: I.13, R.14, I.17 Chain D: A.38, K.42, R.53, Q.90 Ligands: PYR.7 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:I.13, C:I.17, D:A.38 Salt bridges: C:R.14, D:K.42 Hydrogen bonds: D:K.42, D:Q.90 PYR.4: 8 residues within 4Å: Chain C: R.31, V.35, R.53, M.57, I.83, Y.86, I.87 Ligands: PYR.5 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:I.87 Hydrogen bonds: C:R.53 Salt bridges: C:R.31, C:R.53 PYR.5: 7 residues within 4Å: Chain C: A.38, K.42, R.53, Q.90 Chain D: R.14, I.17 Ligands: PYR.4 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:A.38, D:I.17 Hydrogen bonds: C:K.42, C:Q.90 Water bridges: C:A.50 Salt bridges: C:K.42, C:R.53, D:R.14 PYR.7: 8 residues within 4Å: Chain D: R.31, V.35, M.57, I.83, Y.86, I.87, Q.90 Ligands: PYR.3 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.87 Water bridges: D:R.53 Salt bridges: D:R.31

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 2 residues within 4Å: Chain D: E.15, D.18 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.15, D:D.18, H2O.5, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zaitseva, J. et al., Two Crystal Structures of the Isochorismate Pyruvate Lyase from Pseudomonas aeruginosa. J.Biol.Chem. (2006)

Release Date

2006-08-15

Peptides

Salicylate biosynthesis protein pchB: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Salicylate biosynthesis protein pchB

Related Entries With Identical Sequence