SMTL ID : 2h9i.1

Mycobacterium tuberculosis InhA bound with ETH-NAD adduct

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x EAD: {(2R,3S,4R,5R)-5-[(4S)-3-(AMINOCARBONYL)-4-(2-ETHYLISONICOTINOYL)PYRIDIN-1(4H)-YL]-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL}METHYL [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE(Non-covalent)

EAD.1: 28 residues within 4Å: Chain A: G.13, I.14, I.15, S.19, I.20, F.40, L.62, D.63, V.64, S.93, I.94, G.95, I.121, M.146, D.147, F.148, M.154, Y.157, K.164, A.190, G.191, P.192, I.193, T.195, M.198, L.217, W.221 Chain B: L.267 24 PLIP interactions: 23 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.148, A:F.148, A:Y.157, A:Y.157, A:L.217, B:L.267 Hydrogen bonds: A:G.13, A:S.19, A:I.20, A:D.63, A:D.63, A:V.64, A:I.94, A:G.95, A:K.164, A:I.193, A:I.193 Water bridges: A:A.21, A:F.40, A:F.40, A:F.40, A:I.94 pi-Stacking: A:F.40, A:F.40 EAD.2: 28 residues within 4Å: Chain A: L.267 Chain B: G.13, I.14, I.15, S.19, I.20, F.40, L.62, D.63, V.64, S.93, I.94, G.95, I.121, M.146, D.147, F.148, M.154, Y.157, K.164, A.190, G.191, P.192, I.193, T.195, M.198, L.217, W.221 24 PLIP interactions: 1 interactions with chain A, 23 interactions with chain B Hydrophobic interactions: A:L.267, B:F.148, B:F.148, B:Y.157, B:Y.157, B:L.217 Hydrogen bonds: B:G.13, B:S.19, B:I.20, B:D.63, B:D.63, B:V.64, B:I.94, B:G.95, B:K.164, B:I.193, B:I.193 Water bridges: B:A.21, B:F.40, B:F.40, B:F.40, B:I.94 pi-Stacking: B:F.40, B:F.40 EAD.3: 28 residues within 4Å: Chain C: G.13, I.14, I.15, S.19, I.20, F.40, L.62, D.63, V.64, S.93, I.94, G.95, I.121, M.146, D.147, F.148, M.154, Y.157, K.164, A.190, G.191, P.192, I.193, T.195, M.198, L.217, W.221 Chain D: L.267 24 PLIP interactions: 23 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:F.148, C:F.148, C:Y.157, C:Y.157, C:L.217, D:L.267 Hydrogen bonds: C:G.13, C:S.19, C:I.20, C:D.63, C:V.64, C:I.94, C:G.95, C:K.164, C:I.193, C:I.193, C:T.195 Water bridges: C:A.21, C:F.40, C:F.40, C:F.40, C:I.94 pi-Stacking: C:F.40, C:F.40 EAD.4: 28 residues within 4Å: Chain C: L.267 Chain D: G.13, I.14, I.15, S.19, I.20, F.40, L.62, D.63, V.64, S.93, I.94, G.95, I.121, M.146, D.147, F.148, M.154, Y.157, K.164, A.190, G.191, P.192, I.193, T.195, M.198, L.217, W.221 24 PLIP interactions: 23 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:F.148, D:F.148, D:Y.157, D:Y.157, D:L.217, C:L.267 Hydrogen bonds: D:G.13, D:S.19, D:I.20, D:D.63, D:V.64, D:I.94, D:G.95, D:K.164, D:I.193, D:I.193, D:T.195 Water bridges: D:A.21, D:F.40, D:F.40, D:F.40, D:I.94 pi-Stacking: D:F.40, D:F.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Mechanism of thioamide drug action against tuberculosis and leprosy. J.Exp.Med. (2007)

Release Date

2007-01-30

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Enoyl-[acyl-carrier-protein] reductase [NADH]

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