SMTL ID : 2hci.1

Structure of Human Mip-3a Chemokine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.53, T.54, W.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.54, A:W.55

4 x SO3: SULFITE ION(Non-covalent)

SO3.2: 6 residues within 4Å: Chain A: F.4, R.25, Q.26, L.27, E.30, C.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.25, A:L.27, A:E.30 Salt bridges: A:E.30 SO3.3: 7 residues within 4Å: Chain A: R.13, I.14, L.15, F.39, A.49, W.55, I.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.15 SO3.4: 4 residues within 4Å: Chain A: A.28, G.31, C.32, D.33 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.28, A:D.33 Salt bridges: A:D.33 SO3.5: 6 residues within 4Å: Chain A: L.27, N.35, I.37, P.51 Chain B: K.66, V.67 1 PLIP interactions: 1 interactions with chain B Water bridges: B:K.66

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: K.66, V.67, N.69 Chain B: I.37, K.52, K.57 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.52, B:K.52 PEG.7: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.33 PEG.8: 3 residues within 4Å: Chain B: Q.53, T.54, W.55 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.54, B:T.54, B:W.55 PEG.9: 1 residues within 4Å: Chain B: D.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malik, Z.A. et al., Structure of human MIP-3alpha chemokine. Acta Crystallogr.,Sect.F (2006)

Release Date

2006-07-04

Peptides

Small inducible cytokine A20: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Small inducible cytokine A20