SMTL ID : 2hh0.1

Structure of an Anti-PrP Fab, P-Clone, in Complex with its Cognate Bovine Peptide Epitope.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x HIS- GLY- GLN- TRP- ASN- LYS- PRO- SER- LYS: Prion protein(Non-covalent)

HIS-GLY-GLN-TRP-ASN-LYS-PRO-SER-LYS.1: 18 residues within 4Å: Chain A: N.31, L.88, H.90, D.91, F.93 Chain B: E.30, D.31, Y.33, H.35, D.52, E.54, R.98, G.99, A.100, Y.101, I.103, D.106, W.108 18 PLIP interactions: 12 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:D.31, B:Y.33, B:Y.33, B:H.35, B:W.108, A:L.88, A:F.93 Hydrogen bonds: B:E.54, B:E.54, B:E.54, B:A.100, B:Y.101, B:D.106, A:N.31, A:H.90, A:D.91 pi-Stacking: B:H.35 Water bridges: A:N.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luginbuhl, B. et al., Directed evolution of an anti-prion protein scFv fragment to an affinity of 1 pM and its structural interpretation. J.Mol.Biol. (2006)

Release Date

2006-12-26

Peptides

Light Chain, P-Clone Fab, Chimera: A
Heavy Chain, P-Clone Fab, Chimera: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Light Chain, P-Clone Fab, Chimera

Heavy Chain, P-Clone Fab, Chimera