SMTL ID : 2hib.1

human formylglycine generating enzyme, C336S mutant, iodide co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: T.49, E.52, K.53, N.56 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.45, N.208, I.209, G.211, A.213, E.215 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.45, A:N.208, A:G.211, A:A.213, A:E.215, H2O.2 CA.3: 4 residues within 4Å: Chain A: N.174, I.175, D.188, F.190 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.175, A:D.188, A:F.190, H2O.1, H2O.3

11 x IOD: IODIDE ION(Non-functional Binders)

IOD.4: 2 residues within 4Å: Chain A: K.164, P.167 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.139, L.140 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: K.24 Ligand excluded by PLIP IOD.7: 5 residues within 4Å: Chain A: W.214, S.248, S.251, Y.255, C.256 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: R.139, A.282, D.283 Ligand excluded by PLIP IOD.9: 4 residues within 4Å: Chain A: R.116, P.117, D.118, H.119 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: M.76, N.184, Q.191 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: R.151, N.156, R.157 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: W.94, W.95, Y.255 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: K.164, P.167, K.168 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain A: F.199 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roeser, D. et al., Probing the oxygen-binding site of the human formylglycine-generating enzyme using halide ions. Acta Crystallogr.,Sect.D (2007)

Release Date

2007-05-01

Peptides

Sulfatase-modifying factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Sulfatase-modifying factor 1

Related Entries With Identical Sequence