SMTL ID : 2hil.1

Structure of the Neisseria gonorrhoeae Type IV pilus filament from x-ray crystallography and electron cryomicroscopy

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 12.50 Å

Oligo State

homo-18-mer

Ligands

18 x DT6- GLA: alpha-D-galactopyranose-(1-3)-2,4-bisacetamido-2,4-dideoxy-beta-D-glucopyranose(Post Translational Modification)

DT6-GLA.1: 5 residues within 4Å: Chain A: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.50, A:E.59, A:N.60 DT6-GLA.2: 5 residues within 4Å: Chain B: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.50, B:E.59, B:N.60 DT6-GLA.3: 5 residues within 4Å: Chain C: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.50, C:E.59, C:N.60 DT6-GLA.4: 5 residues within 4Å: Chain D: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.50, D:E.59, D:N.60 DT6-GLA.5: 5 residues within 4Å: Chain E: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.50, E:E.59, E:N.60 DT6-GLA.6: 5 residues within 4Å: Chain F: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Y.50, F:E.59, F:N.60 DT6-GLA.7: 5 residues within 4Å: Chain G: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:Y.50, G:E.59, G:N.60 DT6-GLA.8: 5 residues within 4Å: Chain H: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:Y.50, H:E.59, H:N.60 DT6-GLA.9: 5 residues within 4Å: Chain I: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:Y.50, I:E.59, I:N.60 DT6-GLA.10: 5 residues within 4Å: Chain J: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:Y.50, J:E.59, J:N.60 DT6-GLA.11: 5 residues within 4Å: Chain K: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:Y.50, K:E.59, K:N.60 DT6-GLA.12: 5 residues within 4Å: Chain L: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain L Hydrogen bonds: L:Y.50, L:E.59, L:N.60 DT6-GLA.13: 5 residues within 4Å: Chain M: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain M Hydrogen bonds: M:Y.50, M:E.59, M:N.60 DT6-GLA.14: 5 residues within 4Å: Chain N: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain N Hydrogen bonds: N:Y.50, N:E.59, N:N.60 DT6-GLA.15: 5 residues within 4Å: Chain O: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain O Hydrogen bonds: O:Y.50, O:E.59, O:N.60 DT6-GLA.16: 5 residues within 4Å: Chain P: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain P Hydrogen bonds: P:Y.50, P:E.59, P:N.60 DT6-GLA.17: 5 residues within 4Å: Chain Q: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain Q Hydrogen bonds: Q:Y.50, Q:E.59, Q:N.60 DT6-GLA.18: 5 residues within 4Å: Chain R: Y.50, W.57, E.59, N.60, S.63 3 PLIP interactions: 3 interactions with chain R Hydrogen bonds: R:Y.50, R:E.59, R:N.60

18 x OPE: PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER(Covalent)

OPE.19: 2 residues within 4Å: Chain A: S.68, S.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.68 OPE.20: 2 residues within 4Å: Chain B: S.68, S.69 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.68 OPE.21: 2 residues within 4Å: Chain C: S.68, S.69 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.68 OPE.22: 2 residues within 4Å: Chain D: S.68, S.69 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.68 OPE.23: 2 residues within 4Å: Chain E: S.68, S.69 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.68 OPE.24: 2 residues within 4Å: Chain F: S.68, S.69 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:S.68 OPE.25: 2 residues within 4Å: Chain G: S.68, S.69 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:S.68 OPE.26: 2 residues within 4Å: Chain H: S.68, S.69 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:S.68 OPE.27: 2 residues within 4Å: Chain I: S.68, S.69 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:S.68 OPE.28: 2 residues within 4Å: Chain J: S.68, S.69 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:S.68 OPE.29: 2 residues within 4Å: Chain K: S.68, S.69 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:S.68 OPE.30: 2 residues within 4Å: Chain L: S.68, S.69 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:S.68 OPE.31: 2 residues within 4Å: Chain M: S.68, S.69 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:S.68 OPE.32: 2 residues within 4Å: Chain N: S.68, S.69 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:S.68 OPE.33: 2 residues within 4Å: Chain O: S.68, S.69 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:S.68 OPE.34: 2 residues within 4Å: Chain P: S.68, S.69 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:S.68 OPE.35: 2 residues within 4Å: Chain Q: S.68, S.69 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:S.68 OPE.36: 2 residues within 4Å: Chain R: S.68, S.69 1 PLIP interactions: 1 interactions with chain R Hydrogen bonds: R:S.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Craig, L. et al., Type IV Pilus Structure by Cryo-Electron Microscopy and Crystallography: Implications for Pilus Assembly and Functions. Mol.Cell (2006)

Release Date

2006-09-12

Peptides

Fimbrial protein: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

Membrane

We predict this structure to be a membrane protein.
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Fimbrial protein

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